FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000415
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA216590.21658101188800666No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG160680.16067333205671963No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT148940.14893381924650126No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT115610.11560520238410106No Hit
CATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGA108040.10803551652606416No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT101670.1016657808700939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)