FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14293352
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT423680.296417523335324No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC335840.23496237971331008No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG148850.10413932295237674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)