FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13422234
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC259520.19335082371533682No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT181710.1353798480938419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)