FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9220827
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC269140.2918827129063369No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT207670.22521841045277177No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA180260.1954922264564773No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC175620.19046013985513446No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT169120.18341088060756372No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA152970.16589618263090716No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC149720.16237155300712183No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC134290.14563769605481158No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG133750.14505206528655185No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT131610.14273123224196702No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT127450.13821970632352173No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC125150.1357253530513044No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC115050.12477188868200216No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA110130.11943614168230246No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG109640.1189047359851779No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA102600.11126984596934743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)