FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10211717
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG179900.1761701778457041No Hit
CTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAAA160620.15728990531171202No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC146340.14330596901578843No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC144030.14104386167380079No Hit
TGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCAT124480.12189918698295302No Hit
TGAAGATCCTGGTGTCGCCATGGGCCGCCGCCCCGCCCGTTGTTACCGGT107540.10531039980837698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)