FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7301804
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG245670.33645110167295644No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC131710.18038008141549677No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC116930.16013850823714249No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA74060.10142698982333681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)