FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9993955
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA219300.2194326470351327No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG160940.16103734707630762No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT150040.15013075404081766No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT116550.11662049709049119No Hit
CATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGA108950.10901590011161746No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT101990.10205169024675416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)