FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11909051
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC176730.14839973395025347No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT167850.1409432204127768No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA142840.1199423866771584No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG140860.11827978568569401No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA140730.11817062501453726No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG120510.10119194216230999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)