FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11920230
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC173920.14590322502166486No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT166450.13963656741522604No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA141490.1186973741278482No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG141190.11844570113160569No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA140580.11793396603924587No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG119290.10007357240590156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)