FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9752174
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC117610.12059875059653366No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA110200.1130004448238926No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC102530.10513553183115888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)