FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7956828
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG208000.2614107028579731No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC169680.21325080798529264No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT108610.1364991174875214No Hit
TGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAACT86740.10901329022067587No Hit
AGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAA83500.10494131581077284No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG83430.10485334105500334No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC81810.10281735385005181No Hit
CTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAACTCCTGAAAA81460.10237748007120426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)