FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7944284
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG209810.26410183724549624No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC168740.21240428967544464No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT109640.13801117885513658No Hit
AGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAA83440.10503149182481392No Hit
TGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAACT83400.10498114115759206No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG82780.10420070581565312No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC81970.10318110480441031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)