FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12068692
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC220510.1827124264999057No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC196080.1624699677479548No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG184660.1530074675863797No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA163610.13556564373338884No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT141230.1170217949053634No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA134240.11122994935988091No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT127490.10563696546402875No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG124600.10324233976639723No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC123400.10224803151824573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)