FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12025907
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC221280.18400275338899594No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC194450.16169258584820254No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG184100.15308616639060987No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA160480.13344523618883797No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT137730.11452774414437097No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA130260.10831615444889106No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT126000.10477380209243262No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC124190.10326871810999369No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG123290.10252033380933347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)