FastQCFastQC Report
Fri 10 May 2024
EGAF00001984375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15905310
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC579070.36407338178256193No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC493200.31008512251568815No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA278120.1748598424048321No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA273090.17169737653651515No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG260070.1635114310881083No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT234660.14753563432589495No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG207650.13055388420596645No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT206700.1299565993998231No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA200970.12635402893750577No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC200610.12612768943201988No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT199040.1251405976997619No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC192840.12124252843861578No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG176010.11066115655714978No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC162050.10188421351108529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)