FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15857463
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC582540.3673601508639812No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC499920.31525850005136385No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA277660.17509736582705568No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA274560.17314245034025935No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG261230.16473631374703507No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT234900.14813214446724549No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT209110.13186850885289783No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG207950.13113699209009663No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT202320.12758661331891488No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA202240.12753616388699757No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC199620.12588394499170516No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC196470.12389749860996048No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG175740.11082478956438366No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC161490.10183848450411015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)