FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12877949
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC167560.13011388692407463No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA162510.12619245502525286No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT148570.1153677499421686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)