FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12881214
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC168800.13104354915615873No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA160130.12431281709938209No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT148250.11509008390047709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)