FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12740751
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT193280.151702203425842No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC191960.1506661577484718No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT179550.14092575861501414No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA161270.12657809574961476No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA160660.1260993170653755No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC150620.11821909085265067No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG148210.11632752260836116No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA129760.10184642961784592No Hit
CCCAAACCCACCCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC129090.10132055794827165No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT129070.10130486028649333No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT128260.10066910498447071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)