FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12754282
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT194730.15267813586056822No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC189750.14877356483101126No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT180900.14183471872426845No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA162820.127659087355917No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA161570.12667902434649006No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC150860.11828184448171994No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG150290.11783493574942126No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA131950.10345545127510901No Hit
CCCAAACCCACCCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC131290.10293797800613158No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT129040.10117386458916308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)