FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8839406
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC150500.17026030934657826No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG96930.10965668960108857No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC94120.10647774296146144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)