FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11741704
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT502160.42767216751503867No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG173000.14733806949996356No Hit
CTCAGAGACGGAACCAGAGACGGGCCAGAGCATCCCCCTCCTCCACCATG133890.11402944581127236No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC130030.11074201836462577No Hit
CAGAGACGGAACCAGAGACGGGCCAGAGCATCCCCCTCCTCCACCATGAA125170.10660292577636091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)