FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11790838
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT502920.4265345686201439No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG173310.1469870080481133No Hit
CTCAGAGACGGAACCAGAGACGGGCCAGAGCATCCCCCTCCTCCACCATG134480.11405465837118617No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC129670.10997521974265104No Hit
CAGAGACGGAACCAGAGACGGGCCAGAGCATCCCCCTCCTCCACCATGAA126980.10769378732877172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)