FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12756698
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT193880.1519829034127797No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC189430.1484945398879867No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT180250.1412983203020092No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA161650.12671774467029007No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA159890.12533807729868654No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG150440.11793020419547441No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC148340.11628401017253838No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA131460.10305174583579543No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT130350.1021816147093864No Hit
CCCAAACCCACCCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC129750.1017112735599761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)