FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12303102
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT347810.28270106189479693No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC187040.15202670025819506No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA161840.1315440610018514No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT145340.11813280910781689No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC140640.11431263432587976No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG134900.10964714427304594No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC131810.10713558255470855No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG128130.10414446698076632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)