FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12301359
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT345390.2807738559617681No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC187430.15236527931588698No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA165360.13442417215853955No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT148270.12053139819754874No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC139860.11369475518924373No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG136240.11075199089791624No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC130870.1063866195596763No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG127880.1039559938052373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)