FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12320111
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT347510.2820672638420222No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC188230.1527827143765182No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA164680.13366762685823205No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT143750.11667914355641762No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC141420.11478792682955537No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG136770.11101361018581732No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC132110.10723117673209276No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG127690.103643546718045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)