FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8924039
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTAT202900.22736341694607115No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG124340.13933152914280184No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC111290.12470810582517625No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT107040.1199456882696277No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC106310.11912767301890993No Hit
GTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC105550.11827604070309419No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC104640.1172563230617885No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG95490.1070031182069016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)