FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9660798
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT327620.33912312419740065No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC196130.20301635537768206No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG137480.14230708477705464No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC109120.11295133176369074No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC105980.10970108266418573No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT104740.10841754480323468No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA101010.10455658010859972No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA100360.10388375784277863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)