FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001984661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6047393
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC136290.2253698411861111No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT116240.19221505862112814No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC72220.11942336143855707No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA65590.10845995952305398No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG62490.10333378366512644No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT62090.10267234161894226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)