FastQCFastQC Report
Thu 23 May 2024
EGAF00001984875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126274398
Total Bases15.9 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCT5186840.41075943201091325Illumina Single End Sequencing Primer (100% over 32bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4191610.33194456409128953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)