FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001993606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001993606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6481595
Sequences flagged as poor quality0
Sequence length65
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCACGCAATCTCGTATGCCGTCTTCTGCTTG4293206.623678276720469TruSeq Adapter, Index 1 (97% over 39bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCACGCAATCTCGTATGCCGTCTTCTGCTTGA262000.4042214917778726TruSeq Adapter, Index 1 (97% over 38bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)