FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001993628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001993628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11110711
Sequences flagged as poor quality0
Sequence length65
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTACGCAAATCTCGTATGCCGTCTTCTGCTTG2357482.1218084063207114TruSeq Adapter, Index 18 (97% over 40bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTACGCAAATCTCGTATGCCGTCTTCTGCTTGA160610.14455420539693634TruSeq Adapter, Index 18 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)