FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001993975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001993975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6132517
Sequences flagged as poor quality0
Sequence length65
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATCTGAATCTCGTATGCCGTCTTCTGCTTG2297003.7456072278315737TruSeq Adapter, Index 7 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATCTGAATCTCGTATGCCGTCTTCTGCTTGA142850.2329386123185635TruSeq Adapter, Index 7 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)