FastQCFastQC Report
Thu 9 May 2024
EGAF00001993979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001993979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5889861
Total Bases382.8 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGCAGAATCTCGTAT2210233.752601292288562TruSeq Adapter, Index 5 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGCAGAATCTCGTATG91930.15608178189604135TruSeq Adapter, Index 5 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)