FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001994025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001994025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8469426
Sequences flagged as poor quality0
Sequence length65
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGGAGCATCTCGTATGCCGTCTTCTGCTTG1620551.9134118416053225TruSeq Adapter, Index 2 (97% over 36bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGGAGCATCTCGTATGCCGTCTTCTGCTTGA87000.10272242770643489TruSeq Adapter, Index 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)