FastQCFastQC Report
Wed 8 May 2024
EGAF00001994093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001994093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139217
Total Bases34.6 Mbp
Sequences flagged as poor quality0
Sequence length35-301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA4668233.531824417994926No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG3217023.10781010939756No Hit
TCCGTAGGTGAACCTGCCTTTGTAGTGCTCACACAGATTGTCTGATGAAA1755312.60837397731599No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG124698.95652111451906No Hit
TCCGTAGGTGAACCTGCGGTTGGATCATTACCAATCTCAGACTCGCAAGA80735.798860771313849No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA9050.6500642881257318No Hit
TCCGTAGGTGAACCTGCCTTGCATCCCAGGGATAAAGCCAACTTGATGGT7110.5107134904501606No Hit
TCCGTAGGTGAACCTGCCTTTGTAGTGATCACACAGATTGTCTGATGAAA5400.38788366363303334No Hit
TCCGTAGGTGAACCTGCGCATCGATGAAGAACGCAGC4320.3103069309064267No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGTCCA2610.18747710408929943No Hit
TCCGTAGGTGAACCTGCCGAAGGATCATTAGTGAAGATTTGGGCAGGCCA2450.17598425479646881No Hit
TCCGTAGGTGAACCTGCCTTTGTAGTGTTCACACAGATTGTCTGATGAAA2300.16520970858444012No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCC2280.1637731024228363No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCCGGCCA2040.14653382848359037No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGCAGATTTGGGCAGGCCA1910.1371958884331655No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTTGGCAGGCCA1830.13144946378675018No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCACCG1830.13144946378675018No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGCGAAGATTTGGGCAGGCCA1680.12067491757472147No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGATGATTTGGGCAGGCCA1470.10559055287788129No Hit
TCCGTAGGTGAACCTGCCTTTGTAGTGCTCACACAGATTGTCTGCTGAAA1400.10056243131226789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)