FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001996505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001996505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30258569
Sequences flagged as poor quality0
Sequence length99
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT12573084.155213024118886Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1084540.35842408806576415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)