FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001996507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001996507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45463124
Sequences flagged as poor quality0
Sequence length99
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT26154945.753001047618285Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1618770.3560622010929121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)