FastQCFastQC Report
Wed 15 Mar 2023
EGAF00001998393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79679577
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1652360.20737559889405535No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1542520.1935903851497605No Hit
GTTCCAATTTTAGTATATGTGCTGCCGAGATCGGAAGAGCGTCGTGTAGG980520.12305788219734148Illumina Single End PCR Primer 1 (100% over 23bp)
CTTCCGTTCGTCTTCCTCCCTCCCGGCCTCTCCCGCCGACCGCGGGCGTG822700.10325105014048959No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)