FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001998394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72094492
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC2397970.3326148688307562No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC2348940.32581407189886297No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC1418980.19682224822390038No Hit
GGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTT1249650.17333501704956877No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC1122410.15568595725731726No Hit
TACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGA840360.1165636897753576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)