FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001998395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72094492
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG914390.1268321579962031No Hit
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT860750.11939192247862708No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT826490.11463982574424687No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA774510.10742984360025729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)