FastQCFastQC Report
Tue 4 Apr 2023
EGAF00001998409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63294310
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1343120.21220232908771736No Hit
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT863900.1364893621559347No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA762780.12051320252957967No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT740360.11697101998584074No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG738110.11661553779478756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)