FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001998410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75029549
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC4609880.61440859787122No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC4082150.5440723094310482No Hit
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC3007970.40090471555413454No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT2897200.3861411988495359No Hit
GGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTT2873970.3830450853436424No Hit
TACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGA2346930.31280076067097246No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT1771160.2360616615195168No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC1121430.1494651127384492No Hit
TATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT901050.12009268508331299No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG881340.11746572007250103No Hit
ACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAG871640.11617289609457736No Hit
TGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATAC818570.10909968284628768No Hit
CATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT773940.10315135973961405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)