FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001998415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76685384
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG3093150.4033558728740277No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA1937240.25262180339346024No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1700000.22168500844958933No Hit
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1529690.19947608269132489No Hit
TCCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGA1104870.14407830310923395No Hit
GGGGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA890330.11610165504289578No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT873930.113963046726088No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG837500.10921246739795945No Hit
ATTGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACG836110.10903120730281536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)