FastQCFastQC Report
Mon 3 Apr 2023
EGAF00001998418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62341260
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC4580300.7347140561483678No Hit
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC3177610.5097121874020513No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC2863450.45931859574220985No Hit
GGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTT1806670.2898032538963762No Hit
TACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGA1562860.2506943234705234No Hit
TGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATAC1016610.1630717762201149No Hit
TATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT965380.15485410464915209No Hit
CTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTT836710.13421448331329844No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC828290.1328638529282212No Hit
CATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT763290.12243737133320694No Hit
ACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAG758870.12172837058474596No Hit
AATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT738010.11838227202979215No Hit
CGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATA667670.10709921486989515No Hit
TTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGAT634440.10176887666370554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)