FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001998419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62341260
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT2355080.37777228115055744No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1544430.24773801491981395No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1389570.2228973235382153No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1217090.19523025360732202No Hit
CCCTGTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT943240.15130268461048108No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC920860.1477127667936131No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG720820.11562486866643375No Hit
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC649370.10416375928237576No Hit
CCTATCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT643250.10318206593835286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)