FastQCFastQC Report
Tue 4 Apr 2023
EGAF00001998425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65222414
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT2474950.3794631091084731No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1840370.2821683355663591No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1392590.21351402295536012No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1255810.19254270472111013No Hit
CCCTGTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT925580.14191133741231965No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG868200.13311374828904676No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC837000.12833011669883915No Hit
CCTATCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT668590.10250923861849087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)