FastQCFastQC Report
Tue 4 Apr 2023
EGAF00001998427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65770152
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1766010.26851237929326965No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1471450.2237261060305897No Hit
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1400920.21300239658865316No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC931500.14162959513914458No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG899140.13670943013785342No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG754840.11476938657523553No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA706250.1073815368406021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)