FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001998429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74984237
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT2844060.3792877161635985No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT2070740.2761567074423922No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1518780.20254656988774855No Hit
CCCTGTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1280660.1707905622884447No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1203890.16055241050195657No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1127940.15042361503258345No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1090610.14544523537660323No Hit
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC1060950.14148973736973547No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG752080.10029841338520255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)